1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatgtaaagtttatgctgtttattaatcaaatcctgtggcatttgcatgtggagactttatgagcattgagataataatctagctttgtccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTAAGCCTATGTCAGTAGATACAAAATTCCATGATGTGAAGGGCAAGAACT
species | Oryza sativa |
transcript | LOC_Os01g55270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATAAAG ATTTATGTTTTCCTGGAGGCTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|88722755|gb|CI746265.1|CI746265
genomic: AGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGEST: gi|2442237|gb|C74008.1|C74008
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAG
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|8528344|gb|AU093159.1|AU093159
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|58662060|gb|CK050740.1|CK050740
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|8857314|gb|AU094632.1|AU094632
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGAAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|88761044|gb|CI770600.1|CI770600
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|218480065|gb|FG947852.1|FG947852
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|88696075|gb|CI739650.1|CI739650
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|88448600|gb|CI693991.1|CI693991
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTEST: gi|66916223|gb|CX103071.1|CX103071
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
EST: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAG ATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
genomic: ACGTGACGTTGGGGTCGTTCAGCTGGGATCAGGATGCTGAGAAGATAAAGgtatgttgct ... ccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTT
gcatgtggagactttatgagcattgagataataatctagctttgtccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTAAGCCTATGTCAGTAGATACAAAATTCCATGATGTGAAGGGCAAGAACT
ctttgtccatcttc CT-rich tract
attgagataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtaaagtttatgctgtttattaatcaaatcctgtggcatttgcatgtggagactttatgagcattgagataataatctagctttgtccatcttcagATTTATGTTTTCCTGGAGGGTGTTGAGCAAGATAAGGTGGAGACTACTTTTAAGCCTATGTCAGTAGATACAAAATTCCATGATGTGAAGGGCAAGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
atatgta
- - - - - - - tgctgtt
- - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - ctgtggc
- - - - - - - - - - - - - - - - - - - - - - tgcatgt