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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAGAACAACTACGACGCGTACGACATGGGGCGGCTGATCGCCTGCGCGGCCGCCGCCGTGCGCCACACCGCGCGGTCTCGCCCGCGGATGAGCCAGgttcttgccaaaactcctcacaccttcactgaacaaacacaaacacacagcacacaccgcacggcttctggtttcagcaactccgtagcttgtacactgaaaatgtggacactcgaatggtcag

Basic information

species Oryza sativa
transcript LOC_Os01g54700.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G358830_T02 (Zea mays), 5'ss of exon 6
GCTGGAGAACAACTACGACGCGTACGACATGGGGCGGCTGATCGCCTGCGCGGCCGCCGCCGTGCGCCACACCGCGCGGTCTCGCCCGCGGATGAGCCAGgttcttgccaaaactcctcacaccttcactgaacaaacacaaacacacagcacacaccgcacggcttctggtttcagcaactccgtagcttgtacactgaaaatgtggacactcgaatggtcag
|||||||| ||||||||||||||||||||||| ||||||| | || ||||| || |||||||||||||| || |||||||| ||||||||||||||||||||       || ||||||     || ||  ||||   | || |||||| |    || | |  |||| |  |  | |   ||||     |  || | |  |   |  |                 
GCTGGAGACCAACTACGACGCGTACGACATGGCGCGGCTGGTTGCGTGCGCCGCGGCCGCCGTGCGCCAGACTGCGCGGTCCCGCCCGCGGATGAGCCAGgt-------aagactcctg----ctcca--gaacgt-ctcacacacactgggtgcagc-cgtggctgcaagcgtga--cactcgtctccccgttcccaaatggtcag-----------------