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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgggcttccgagtcttgaaccgaacacgtagatttccatttgccacggccggtgaaagtagtcatctctgtgtgtgtccaacag

Basic information

species Oryza sativa
transcript LOC_Os01g54700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G470499_T01 (Zea mays), 5'ss of exon 5
CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgggcttccg--agtcttgaacc-----gaacacgtagatttccatttgcca-cggccggtgaaagtagtca-tctctgtgtgtgtccaacag------------------------------------------------------------------------------------
|||||||||||| ||||| |||||||| |||||||| |||||||||| ||| || |||||||  |||   |     ||| |||   |||||||||||||||||||||| | | |    | |   | ||     |   |  |   || ||||    ||     |  |||  ||  | | | || ||    ||     |                                                                                     
CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacag

upper sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G358830_T02 (Zea mays), 5'ss of exon 5
CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgg-gcttcc-gagtcttgaaccgaacacgtagatttccatttgccacg--gccggtgaaagta----gtcatctctgtgtgtgtccaacag---
|||||||||||| |||||||||||||| ||||| |||||||| || | ||| || ||||||   |||   |   | |||||||| ||||| |||||||||||||||||  ||||  | | |   | | |  ||       |   | |    | |  ||  ||  || ||    || | |      |   |   || |   
CGACGTCTTCTCCTTCGGCGTGATGCTTCTGGAACTGATCACTGGAAGGAAACCAATCATGACATCTTCAGAGTATCAGCCTGAGACATTAGTTTCTTGGgtgagtggcacttcttgcgcccaaagctgcccattctatgtcttactccagaagtcgcttgtctaattacttagttaccatcacttagttatgactgtga

upper sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G470499_T02 (Zea mays), 5'ss of exon 5
CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgggcttccg--agtcttgaacc-----gaacacgtagatttccatttgcca-cggccggtgaaagtagtca-tctctgtgtgtgtccaacag-----------------------------------------------------------------------------------------
|||||||||||| ||||| |||||||| |||||||| |||||||||| ||| || |||||||  |||   |     ||| |||   |||||||||||||||||||||| | | |    | |   | ||     |   |  |   || ||||    ||     |  |||  ||  | | | || ||    ||     |                                                                                          
CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacaggctag

upper sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G470499_T05 (Zea mays), 5'ss of exon 5
CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgggcttccg--agtcttgaacc-----gaacacgtagatttccatttgcca-cggccggtgaaagtagtca-tctctgtgtgtgtccaacag--------------------------
|||||||||||| ||||| |||||||| |||||||| |||||||||| ||| || |||||||  |||   |     ||| |||   |||||||||||||||||||||| | | |    | |   | ||     |   |  |   || ||||    ||     |  |||  ||  | | | || ||    ||     |                           
CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatag