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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgccaaaactcctcacaccttcactgaacaaacacaaacacacagcacacaccgcacggcttctggtttcagcaactccgtagcttgtacactgaaaatgtggacactcgaatggtcagATCGTGCGTTACCTGGAGGGCGAGCTGGCGGCGGAGGACCTGAACGCTGGCGTGACGCCCGGGCAGAGCGCGATGCAGCGGACGAGCGGCGGCACGACGG

Basic information

species Oryza sativa
transcript LOC_Os01g54700.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54700.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G358830_T02 (Zea mays), 3'ss of exon 6
gttcttgccaaaactcctcacaccttcactgaacaaacacaaacacacagcacacaccgcacggcttctggtttcagcaact-ccgtagcttgtacactgaaaatgtggacactcgaatggtcagATCGTGCGTTACCTGGAGGGCGAGCTGGCGGCGGAGGACCTGAACGCTGGCGTGACGCCCGGGCAGAGCGCGATGCAGCGGACGAGCGGCGGCACGACGG
                                  | || |   | | ||| ||    | |||     |||| | ||||     | | |      |||||     |       | | ||||||||| |||| || |||||||||||||||||| ||| ||||||||| ||||| ||||||| ||| |||||||| |||||||||||| ||||||||||||||||||
-------------------------------gtaagactcctgctc-cagaacgtctcacaca--cactgggtgcagccgtggctgcaagcgtgacactcgtc-tccccgttcccaaatggtcagGTCGTCCGGTACCTGGAGGGCGAGCTGTCGGTGGAGGACCTAAACGCCGGCGTGATGCCGGGGCAGAGTGCGATGCAGCGGTCGAGCGGCGGCACGACGG

upper sequence: LOC_Os01g54700.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G470499_T02 (Zea mays), 3'ss of exon 6
gttcttgccaaaactcctcacaccttcactgaacaaacacaaacacacagcacacaccgcacggcttctggtttcagcaactccgtagcttgtacactgaaaatgtggacactcgaatggtcagATCGTGCGTTACCTGGAGGGCGAGCTGGCGGCGGAGGACCTGAACGCTGGCGTGACGCCCGGGCAGAGCGCGATGCAGCGGACGAGCGGCGGCACGACGG
                   |   |||| |||  |||  ||| |   ||  | ||||| | | |    |  ||  | |||| | |  ||| |   ||||    || |       | |||||  ||||||| || |||||||||||||||||| ||| ||||||||||||||| ||||||  ||| |||||||||||| |||||||| || |||||||||| ||||
-----------------gtaaggcttc-ctgcccaagaacaga---acgtctcacactggatgcagccgtgtggctgcaagtgca-agcgt---cact---catttcccgctccaaatggctagATCGTCCGGTACCTGGAGGGCGAGCTGTCGGTGGAGGACCTGAACGCCGGCGTGGTGCCGGGGCAGAGCGCGGTGCAGCGGTCGGGCGGCGGCACCACGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttcagcaactccgtagcttgtacactgaaaatgtggacactcgaatggtcagATCGTGCGTTACCTGGAGGGCGAGCTGGCGGCGGAGGACCTGAACGCTGGCGTGACGCCCGGGCAGAGCGCGATGCAGCGGACGAGCGGCGGCACGACGG
                            tgaaaat  TA-rich tract