1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GGGTGGTTATGCATCGGACCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGgtgaggttgctccagtaatgtgaagtagttgttagtatacagtagaattatgatactagcatatgttccaacttccaacttaatgatgtcatctccttgt...
species | Oryza sativa |
transcript | LOC_Os01g54080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGGATCTTGAGGAG GGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGEST: gi|33679163|gb|CF307402.1|CF307402
genomic: GAAGGATCTTGAGGAGgtgaggttgc ... gtgattacagGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTG
EST: TTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAG GGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGEST: gi|33800511|gb|CF326125.1|CF326125
genomic: TTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGgtgaggttgc ... gtgattacagGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTG
EST: TTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAG GGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGEST: gi|58655603|gb|CK044283.1|CK044283
genomic: TTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGgtgaggttgc ... gtgattacagGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTG
EST: TTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAG GGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTG
genomic: TTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGgtgaggttgc ... gtgattacagGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGGTTATGCATCGGACCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGgtgaggttgctccagtaatgtgaagtagttgttagtatacagtagaattatgatactagcatatgttccaacttccaacttaatgatgtcatctccttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG