1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...acttgttaacttgttaatatacttttgtcagtagcttctccgttcacctttggttattaatattatcctgcctcgatttcataattgtgttattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGACAGAAATG
species | Oryza sativa |
transcript | LOC_Os01g54080.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAG GTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGCACAGEST: gi|58595522|gb|CK006050.1|CK006050
genomic: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGgtattttttt ... tattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAG
EST: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAG GTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGEST: gi|88696255|gb|CI739830.1|CI739830
genomic: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGgtattttttt ... tattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAG
EST: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAG GTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGEST: gi|163928538|gb|EG710859.1|EG710859
genomic: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGgtattttttt ... tattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAG
EST: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAG GTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGEST: gi|157650722|gb|EX450356.1|EX450356
genomic: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGgtattttttt ... tattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAG
EST: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAG GTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAG
genomic: CTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGgtattttttt ... tattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAG
acctttggttattaatattatcctgcctcgatttcataattgtgttattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGACAGAAATG
tattaat putative branch site (score: 28)
tggttattaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgttaacttgttaatatacttttgtcagtagcttctccgttcacctttggttattaatattatcctgcctcgatttcataattgtgttattgtccagGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGACAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - -cttttgt
- - - - - - - - - - - - - - cagtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgcc