1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TGGGCCCGGATCGGCCGGCATTCCCCGCCCCGCGCGCGCTCCGGCCCCGGGCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgtcgatctggggtttctcgcttctcttctcgctgcggggaagtggctcgaattcgagccgcggacctacaaagtttggatctttcagagttt...
species | Oryza sativa |
transcript | LOC_Os01g54080.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88727863|gb|CI749375.1|CI749375
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|58653012|gb|CK041692.1|CK041692
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|33679163|gb|CF307402.1|CF307402
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|33800511|gb|CF326125.1|CF326125
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88743017|gb|CI766525.1|CI766525
genomic: GGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88450031|gb|CI572162.1|CI572162
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88723183|gb|CI746693.1|CI746693
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|58686905|gb|CK075592.1|CK075592
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|58655603|gb|CK044283.1|CK044283
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88314457|gb|CI604941.1|CI604941
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88765709|gb|CI774803.1|CI774803
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88825003|gb|CI775568.1|CI775568
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88743720|gb|CI767228.1|CI767228
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTEST: gi|88722346|gb|CI745856.1|CI745856
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
EST: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGG CCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
genomic: GCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgt ... caaattctagCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCCCGGATCGGCCGGCATTCCCCGCCCCGCGCGCGCTCCGGCCCCGGGCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGgtgaggccgtcgatctggggtttctcgcttctcttctcgctgcggggaagtggctcgaattcgagccgcggacctacaaagtttggatctttcagagttt
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