1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgggtataccttttcgccgtttaatgtgtattattctaacactggcatcgacttcaaatggcgtgtacagtgcttataattttcagaaactaaatcatgtagtctgtattttcagaaaccaatattttcacagttgcccttgttttgcacaaactaagtagttcttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGACATTGAACCTGAAGAGATCCGTCCTATGGGAAACTACGCAGTTTCTATAA
species | Oryza sativa |
transcript | LOC_Os01g52170.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTG GACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGACEST: gi|38481133|gb|CF965222.1|CF965222
genomic: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTGgtgggtatac ... ttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGAC
EST: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTG GACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGACEST: gi|29641473|gb|CB646480.1|CB646480
genomic: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTGgtgggtatac ... ttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGAC
EST: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTG GACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGACEST: gi|29613739|gb|CB618752.1|CB618752
genomic: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTGgtgggtatac ... ttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGAC
EST: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTG GACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGAC
genomic: TGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTGgtgggtatac ... ttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGAC
caatattttcacagttgcccttgttttgcacaaactaagtagttcttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGACATTGAACCTGAAGAGATCCGTCCTATGGGAAACTACGCAGTTTCTATAA
ttcttgtct CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtataccttttcgccgtttaatgtgtattattctaacactggcatcgacttcaaatggcgtgtacagtgcttataattttcagaaactaaatcatgtagtctgtattttcagaaaccaatattttcacagttgcccttgttttgcacaaactaagtagttcttgtctgcagGACGAATGGACAGGTGAGCAGAAAGTACAATATGGTGATATACCAGAAGACATTGAACCTGAAGAGATCCGTCCTATGGGAAACTACGCAGTTTCTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC