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ATTCCTGAAGTAGTGGCTGATCCACAAGGGGATGTTGCTAAGACGTTTCAGAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagcagttcacaaattacaacctagaatatgtaaaagtagttcatacaatttattttcttggtgaattcgaactaaccaaaatttaaacaaaac...
species | Oryza sativa |
transcript | LOC_Os01g52170.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGG TTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAGEST: gi|27577753|gb|CB000448.1|CB000448
genomic: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagc ... attttgccagTTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAG
EST: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGG TTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAGEST: gi|66923650|gb|CX110498.1|CX110498
genomic: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagc ... attttgccagTTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAG
EST: AAATCTTGGAGTTTGTGTTGTTCAGCAATGTGCTAAAATCAGACAACAGG TTTCAACAGCAGTTTTCTATGATAGATCEST: gi|38481133|gb|CF965222.1|CF965222
genomic: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagc ... attttgccagTTTCAACAGCAGTTTCCTATGATAGATC
EST: TGTGCTAAAATCAGACAACAGG TTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAGEST: gi|29641473|gb|CB646480.1|CB646480
genomic: TGTGCTAAAATCAGACAACAGGgtaagttagc ... attttgccagTTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAG
EST: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGG TTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAGEST: gi|29613739|gb|CB618752.1|CB618752
genomic: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagc ... attttgccagTTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAG
EST: GAATCTTGGAGTTTGTGTTGTTCAGCAATGTGCTAAAATCAGACAACAGG TTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAG
genomic: GAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagc ... attttgccagTTTCAACAGCAGTTTCCTATGATAGATCAATTAGAGCAATCCGAGTGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCCTGAAGTAGTGGCTGATCCACAAGGGGATGTTGCTAAGACGTTTCAGAATCTTGGAGTTTGTGTTGTTCAGCAGTGTGCTAAAATCAGACAACAGGgtaagttagcagttcacaaattacaacctagaatatgtaaaagtagttcatacaatttattttcttggtgaattcgaactaaccaaaatttaaacaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa