1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatattctagttctttctttggacgagctattatttgtaactttgaacaattcaaccacagaaattacgattaacctgtcaaaatcacattcagGCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAATGTCCAAGCAGATATTCTGAGCACTGC
species | Oryza sativa |
transcript | LOC_Os01g51780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTATGCTATTGGAATGCGTGGAGTATTGCTGAAGATAGCCATTGTACAG GCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAATEST: gi|8527819|gb|AU092634.1|AU092634
genomic: CTTATGCTATTGGAATGCGTGGAGTATTGCTGAAGATAGCCATTGTACAGgtatattcta ... tcacattcagGCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAAT
EST: CTTATGCTATTGGAATGCGTGGAGTATTGCTGAAGATAGCCATTGTACAG GCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAAT
genomic: CTTATGCTATTGGAATGCGTGGAGTATTGCTGAAGATAGCCATTGTACAGgtatattcta ... tcacattcagGCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAAT
actttgaacaattcaaccacagaaattacgattaacctgtcaaaatcacattcagGCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAATGTCCAAGCAGATATTCTGAGCACTGC
gattaac putative branch site (score: 2)
agaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattctagttctttctttggacgagctattatttgtaactttgaacaattcaaccacagaaattacgattaacctgtcaaaatcacattcagGCAGCTCTACCTCAAGGAATAGTTCCGTTTGTGTTTGCAAAGGAGTACAATGTCCAAGCAGATATTCTGAGCACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT