1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGGCACATAAGATTACCGTTGATTGTCAGCAATTCTATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAGgtaagaatagcaggatatctgattcagcttgatgcaatgcagataaacttctaaatacgtctaaactttgcgaaaaccaattatgttattataaattctaaatacttctaatcacag
species | Oryza sativa |
transcript | LOC_Os01g51780.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAG GCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGAEST: gi|8527819|gb|AU092634.1|AU092634
genomic: TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAGgtaagaatag ... ctaatcacagGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA
EST: TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAG GCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA
genomic: TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAGgtaagaatag ... ctaatcacagGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCACATAAGATTACCGTTGATTGTCAGCAATTCTATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAGgtaagaatagcaggatatctgattcagcttgatgcaatgcagataaacttctaaatacgtctaaactttgcgaaaaccaattatgttattataaattctaaatacttctaatcacag
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG