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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatagcaggatatctgattcagcttgatgcaatgcagataaacttctaaatacgtctaaactttgcgaaaaccaattatgttattataaattctaaatacttctaatcacagGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGATGCTACTAGCATTAGCCATCAGGTTCTTTCTAGGACCAGCACTAATGGG

Basic information

species Oryza sativa
transcript LOC_Os01g51780.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2311558|gb|C27713.1|C27713
EST:     TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAG                         GCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA
genomic: TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAGgtaagaatag ... ctaatcacagGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA
EST: gi|8527819|gb|AU092634.1|AU092634
EST:     TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAG                         GCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA
genomic: TATAAGGATGCTCTCGGATGGAGGGCTGGGAATGGCAATGTTCAGCCTAGgtaagaatag ... ctaatcacagGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactttgcgaaaaccaattatgttattataaattctaaatacttctaatcacagGCCTTTTCACTGCTCTACAAACTAAAATTATAGCCTGTGGAGCTAAAAGGATGCTACTAGCATTAGCCATCAGGTTCTTTCTAGGACCAGCACTAATGGG
                                           ttctaat  putative branch site (score: 2)
                                        tacttct  CT-rich tract
                aattatgttattataa  TA-rich tract