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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatttttcaagatggttttgtattaatgttttcaatagtttcagctgtgggaaatcagttaagtatcactcttcacacatctcttatcatactgcagCAAAAAGCTGATGGAACAGGCAACTCTCTATCATTCTTACTGGATGGAGAGTATTCTGGTCTGATTTTTGTGGTAAAACTTGATGAGTATACTTGGTTGA

Basic information

species Oryza sativa
transcript LOC_Os01g51754.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33794362|gb|CF323067.1|CF323067
EST:     CACCTGCAACGAAGATATTCCGACAGAAAGCTCTTCAGACCATGCTACAA                         CAAAAAGCTGATGGAACAGGCAACTCTCTATCATTCTTACTGGATGGAGAG
genomic: CACCTGCAACGAAGATATTCCGACAGAAAGCTCTTCAGACCATGCTACAAgtaaggacct ... catactgcagCAAAAAGCTGATGGAACAGGCAACTCTCTATCATTCTTACTGGATGGAGAG
EST: gi|58693732|gb|CK082419.1|CK082419
EST:     CACCTGCAACGAAGATATTCCGACAGAAAGCTCTTCAGACCATGCTACAA                         CAAAAAGCTGATGGAACAGGCAACTCTCTATCATTCTTACTGGATGGAGAG
genomic: CACCTGCAACGAAGATATTCCGACAGAAAGCTCTTCAGACCATGCTACAAgtaaggacct ... catactgcagCAAAAAGCTGATGGAACAGGCAACTCTCTATCATTCTTACTGGATGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtgggaaatcagttaagtatcactcttcacacatctcttatcatactgcagCAAAAAGCTGATGGAACAGGCAACTCTCTATCATTCTTACTGGATGGAGAGTATTCTGGTCTGATTTTTGTGGTAAAACTTGATGAGTATACTTGGTTGA
                                     tctcttatc  CT-rich tract
                ttaagtat  TA-rich tract