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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttctaatcctatgaaaaacatgttaaagaactcactactgacattcacatcccagggatctctaagtttgtttgatgtctgagtcgaaagctcgttgcatcctgtagccatattttttctcatttgatcttcctattgctgaacaatatttcaaactttcagGACTATGCAATTGAAACATCTTTGGACACTCCACACAATTCAGAAGGCAAGACGATTCATGAAGTGCAAATCAAAATTGATAAGGGCACATCAATTGCTG

Basic information

species Oryza sativa
transcript LOC_Os01g51754.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88430158|gb|CI565171.1|CI565171
EST:     GGGACCAACCTCCTTCAGACATGAGACCTCCCGGTTCAGTGCCTATTAAG                         GACTATGCAATTGAAACATCTTTGGACACTCCACACAATTCAGAAGGCAAG
genomic: GGGACCAACCTCCTTCAGACATGAGACCTCCCGGTTCAGTGCCTATTAAGgttgttctaa ... aaactttcagGACTATGCAATTGAAACATCTTTGGACACTCCACACAATTCAGAAGGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatattttttctcatttgatcttcctattgctgaacaatatttcaaactttcagGACTATGCAATTGAAACATCTTTGGACACTCCACACAATTCAGAAGGCAAGACGATTCATGAAGTGCAAATCAAAATTGATAAGGGCACATCAATTGCTG
              atttgat  putative branch site (score: 5)
                                                ctttc  putative PPT
                                     aatatttcaaacttt  TA-rich tract