1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataggatgcttgatcatgaatattaccacattgaaaatttaccccatttgcacctttcatatttcagttatctaacatactcacatctctgatttcttagGGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTGCTGAGCCTCATAAAACTGTACCCGATGATAAAGGTTCAAGAACCAAACA
species | Oryza sativa |
transcript | LOC_Os01g51754.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGTGGAGATCTACTAGGAACAGAACAAGATATTGATGTCAGGCCAG GGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTGEST: gi|33794362|gb|CF323067.1|CF323067
genomic: CTTTGGTGGAGATCTACTAGGAACAGAACAAGATATTGATGTCAGGCCAGgttaggaagt ... gatttcttagGGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTG
EST: TATTGATGTCAGGCCAG GGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTGEST: gi|88430158|gb|CI565171.1|CI565171
genomic: TATTGATGTCAGGCCAGgttaggaagt ... gatttcttagGGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTG
EST: CTTTGGTGGAGATCTACTAGGAACAGAACAAGATATTGATGTCAGGCCAG GGGCTTTAGGTCAC
genomic: CTTTGGTGGAGATCTACTAGGAACAGAACAAGATATTGATGTCAGGCCAGgttaggaagt ... gatttcttagGGGCTTTAGGTCAC
atttgcacctttcatatttcagttatctaacatactcacatctctgatttcttagGGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTGCTGAGCCTCATAAAACTGTACCCGATGATAAAGGTTCAAGAACCAAACA
tttctt CT-rich tract
tttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataggatgcttgatcatgaatattaccacattgaaaatttaccccatttgcacctttcatatttcagttatctaacatactcacatctctgatttcttagGGGCTTTAGGTCACCTATCTAACGTGTTACAGAAACCTGAGGGACCTATTGCTGAGCCTCATAAAACTGTACCCGATGATAAAGGTTCAAGAACCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC