1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgattaaaaaaaatagataaaacgaactgctctgccataactttcctccaatgtttttgaacgaaaaaaatattcttgaaactttcctccaatgttcagTCTTACTCTTACAGTAACTGGGAAAACCAGTTCTGCAAAGCCAGCACAGTGCACGGTGCCGTGTCGGGTGGCTGCGCTTCATCCATCCTCAGCCTGCAGG
species | Oryza sativa |
transcript | LOC_Os01g51550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
cctccaatgtttttgaacgaaaaaaatattcttgaaactttcctccaatgttcagTCTTACTCTTACAGTAACTGGGAAAACCAGTTCTGCAAAGCCAGCACAGTGCACGGTGCCGTGTCGGGTGGCTGCGCTTCATCCATCCTCAGCCTGCAGG
ctttcctcc CT-rich tract
aaaaaaatattcttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattaaaaaaaatagataaaacgaactgctctgccataactttcctccaatgtttttgaacgaaaaaaatattcttgaaactttcctccaatgttcagTCTTACTCTTACAGTAACTGGGAAAACCAGTTCTGCAAAGCCAGCACAGTGCACGGTGCCGTGTCGGGTGGCTGCGCTTCATCCATCCTCAGCCTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - aaaaaaa
- - - - - - - -agataaaa
- - - - - - - - - - - - -aactgct
- - - - - - - - - - - - - - - - -tgccata
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcttg