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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGGGATCGTGTCGTCCACCGTGCGGGAGCTCTACCTCGCCAACCCCAACGTCGCCGCCGCGCTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgcgtgctccgcgcgtcgcgtctcattcacagtcatgctgtcctttctacactcgcacgcttgacacaaccaaggtgttcccttccccgtgacgcgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g51550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G067096_T09 (Zea mays), 5'ss of exon 1
CGAGGGGATCGTGTCGTCCACCGTGCGGGAGCTCTACCTCGCCAACCCCAACGTCGCCGCCGCGCTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgcgtgctccgcgcgtcgcgtctcat---tcacagtcatgctgtcctt-tctacactcgcacgcttgacacaaccaaggtgttcccttccccgtgacgcgcgtgcag
    | ||| ||||||||||  |||||| ||||||||| |||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||   | || |  | |   |   |||   |        ||   ||| | || ||  |||  ||                                            
----GAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacg-tcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag---------------------------------------

upper sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G067096_T05 (Zea mays), 5'ss of exon 1
CGAGGGGATCGTGTCGTCCACCGTGCGGGAGCTCTACCTCGCCAACCCCAACGTCGCCGCCGCGCTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgcgtgctccgcgcgtcgcgtctcat---tcacagtcatgctgtcctt-tctacactcgcacgcttgacacaaccaaggtgttcccttccccgtgacgcgcgtgcag
||||| ||| ||||||||||  |||||| ||||||||| |||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||   | || |  | |   |   |||   |        ||   ||| | || ||  |||  ||                                            
CGAGGAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacg-tcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag---------------------------------------