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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCGCGCGCATCCCGTCGCCGAACGCCACCTACACCGTGACGCTCGATGCGTTCGCCCGCCGCGGCTTCACCGAGCGCGAGACCGTCGCGCTCTTAGgtccgtcccgttcgtccctccgtctgtccattggcgctcgcgcgcatgcatatgcatttgatttttgttggcgctgtagcag

Basic information

species Oryza sativa
transcript LOC_Os01g51550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067096_T08 (Zea mays), 5'ss of exon 2
-------------------GTGGGCGCGCGCATCCCGTCGCCGAACGCCACCTACACCGTGACGCTCGATGCGTTCGCCCGCCGCGGC---TTCACCGAGCGCGAGACCGTCGCGCTCTTAGgtccgtc-ccgttcgtccctccgtctgtccattggcgctcgcgcgcatgcatatgcatttgatttttgttggcgctgtagcag
                     ||  | | |||||||| ||||||||||||||||| || |||||||||| |||||||| ||||||||    ||||| ||||| ||||||||||||||| ||||| || |  ||   | |  || | || ||       |  |  |||||      |||||                         
AGCTTCTACTACGACGCGGACGGAGGTG-GCATCCCGCCGCCGAACGCCACCTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCgtgagaccgtcgcgctcctaggttcgccgtcgcctgacgatctgactctctgagtctgagc-tgcgcaactccctgcatgcag---------------------

upper sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067096_T01 (Zea mays), 5'ss of exon 2
GTGGGCGCGCGCATCCCGTCGCCGAACGCCACCTACACCGTGACGCTCGATGCGTTCGCCCGCCGCGGC---TTCACCGAGCGCGAGACCGTCGCGCTCTTAGgtccgtc-ccgttcgtccctccgtctgtcca--ttggcgct-cgcg------cgcatgcatatgcatttgatttttgttggcgctgta-gcag
  ||  | | |||||||| ||||||||||||||||| || |||||||||| |||||||| ||||||||    ||||| ||||| ||||||||||||||| ||||| || |  ||   | |  || | || ||    |  | ||| |||        |||||||    |     |       | || |||   ||||
--GGAGGTG-GCATCCCGCCGCCGAACGCCACCTACGCCATGACGCTCGACGCGTTCGCGCGCCGCGGGCAGTTCACGGAGCGTGAGACCGTCGCGCTCCTAGgttcgccgtcgcctgacgatctgactctctgagtctgagctgcgcaactccctgcatgcagtgacgcaaaaggcagtcttgctctgcgcgcag