1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGgtgagtttggtgactacaaattgctttcaattatttaaccacttagagtacgatacttatttcttaaattccccccttctcttccatgatgcag
species | Oryza sativa |
transcript | LOC_Os01g49930.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGG TGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAGEST: gi|25805360|gb|CA761321.1|CA761321
genomic: TGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGgtgagtttgg ... catgatgcagTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAG
EST: CAGTTTCGATGGGTTTTTGGCTGAAGACAGG TGTTGGAGATTTTAAAGAATGCAGTTGTTCCCCCGTCTTTGAAGTCATGAGEST: gi|29678652|gb|CB674927.1|CB674927
genomic: CAGTTTCGATGGGTTTTTGGCTGAAGACAGGgtgagtttgg ... catgatgcagTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAG
EST: TGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGG TGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAG
genomic: TGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGgtgagtttgg ... catgatgcagTGTTGGAGATTTTGAAGAATGCAGTTGTTCACCTGTCTTTGAAGTCATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGGgtgagtttggtgactacaaattgctttcaattatttaaccacttagagtacgatacttatttcttaaattccccccttctcttccatgatgcag
- - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA