1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatctatctgaaaagcttgatgtcattttagtccctttttgctctcattggtttgcctgcaccaacccacacattatctttggtatcagGTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGG
species | Oryza sativa |
transcript | LOC_Os01g49930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGNTTTTGTATGGAACTTCTTGAATTTTTGTTGGNTATATCATATATTCG GNGGGAGATGNGAAAGGTTGGNCTAGATCATGAANTTGCEST: gi|29689342|gb|CB685617.1|CB685617
genomic: TGTTTTTGTATGGAACTTCTTGAATTTT-GTTGATTATATCATATATTCGgtaaatctat ... ttggtatcagGTGGGAGATGTGAATGTTTGT-CTAGATCATGAATTTGC
EST: ATGTTTTTGTATGGAACTTCTTGAATTTTGTTGATTATATCATATATTCG GTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTEST: gi|58677102|gb|CK065789.1|CK065789
genomic: ATGTTTTTGTATGGAACTTCTTGAATTTTGTTGATTATATCATATATTCGgtaaatctat ... ttggtatcagGTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGT
EST: ATGTTTTTGTATGGAACTTCTTGAATTGTGTTGATTATATCATATATTCG GTGGGAGATGTGAATGTTTGTCTAGATCATGAAT
genomic: ATGTTTTTGTATGGAACTTCTTGAATTTTGTTGATTATATCATATATTCGgtaaatctat ... ttggtatcagGTGGGAGATGTGAATGTTTGTCTAGATCATGAAT
ctttttgctctcattggtttgcctgcaccaacccacacattatctttggtatcagGTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGG
ttatcttt CT-rich tract
attatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctatctgaaaagcttgatgtcattttagtccctttttgctctcattggtttgcctgcaccaacccacacattatctttggtatcagGTGGGAGATGTGAATGTTTGTCTAGATCATGAATTTGCAGTTTCGATGGGTTTTTGGCTGAAGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA