1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttagtttttactatgtgcatgtataggctatttgcttgcacagacttttcagctgcatttcactaaatcaactaatattagtccaaaattactctttcagGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTTCTTTTCCTCATGTAGTTCTGAGGATCATCATAACTCACAAGGTGCCGT
species | Oryza sativa |
transcript | LOC_Os01g49930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTC GTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTEST: gi|58691763|gb|CK080450.1|CK080450
genomic: TGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTCgtgagtatcc ... actctttcagGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTT
EST: TGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTC GTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTT
genomic: TGGGCATGGCGGTAGCGAGGGAGGTGGCAAACGAGAAGCTGTTTCCACTCgtgagtatcc ... actctttcagGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTT
ttttcagctgcatttcactaaatcaactaatattagtccaaaattactctttcagGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTTCTTTTCCTCATGTAGTTCTGAGGATCATCATAACTCACAAGGTGCCGT
aactaat putative branch site (score: 12)
ttactctttc putative PPT
taaatcaactaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtttttactatgtgcatgtataggctatttgcttgcacagacttttcagctgcatttcactaaatcaactaatattagtccaaaattactctttcagGTAAGCTGGCAACTTTGAGAGTAAAACAGACTTCAGGGAGCTATTTCTCTTTCTTTTCCTCATGTAGTTCTGAGGATCATCATAACTCACAAGGTGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - agctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccaaaa