1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacagtcatttgatgatttcttactctatttttcagagagtgtgtacagtcactacattctggatcatctattaattgtttccttgtaaatgtttttcatctaccttttgcag
species | Oryza sativa |
transcript | LOC_Os01g49690.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|86253096|gb|CI058021.1|CI058021
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|163921174|gb|EG710163.1|EG710163
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: AGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|218484413|gb|FG953190.1|FG953190
genomic: AGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCAGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|24468838|gb|CA305787.1|CA305787
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TAGCCCTCNGTGGAGCAGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|27577318|gb|CB000013.1|CB000013
genomic: TAGCCCTC-GTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|86870962|gb|CI326781.1|CI326781
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTT-GCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|431829|gb|D23910.1|D23910
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|325493557|gb|JG458081.1|JG458081
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: GGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGGTTGCCGAGCTCACCAGCTGGTTEST: gi|218492898|gb|FG955355.1|FG955355
genomic: GGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCAGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|27577630|gb|CB000325.1|CB000325
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|86422413|gb|CI059986.1|CI059986
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: GGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|86419470|gb|CI054271.1|CI054271
genomic: GGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: CGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|27334364|gb|CA882815.1|CA882815
genomic: CGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAAATCTCGATCTAGTTTTGCCGAGCTCACCAGCTGGEST: gi|51946060|gb|CV152401.1|CV152401
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAA-TCTCGATCTAGTTT-GCCGAGCTCACCAGCTGG
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|89180552|gb|CI044831.1|CI044831
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTTEST: gi|29686455|gb|CB682730.1|CB682730
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
EST: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAG TTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
genomic: TTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacag ... ccttttgcagTTCAACCATATTAACAATCTCGATCTAGTTTGCCGAGCTCACCAGCTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCCCTCGTGGAGCTGGTTGGCTTTTTGGATCACGAGTGACAGCTGAGgtatgtacagtcatttgatgatttcttactctatttttcagagagtgtgtacagtcactacattctggatcatctattaattgtttccttgtaaatgtttttcatctaccttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA