1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggttgcactcattttctcaaggattctgatttatagtttgtacccaagtgttactatctgtggctcattcttgctattgggtttcctgattgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAG
species | Oryza sativa |
transcript | LOC_Os01g49690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAG GTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTEST: gi|218484413|gb|FG953190.1|FG953190
genomic: GGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGgtatttgcct ... ttgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTT
EST: TTCAACAGTCTGGAGGTC-TCACCATTCTGTTGCTACTAAAAGCGAG GTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTEST: gi|27577318|gb|CB000013.1|CB000013
genomic: TTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGgtatttgcct ... ttgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTT
EST: GGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAG GTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTEST: gi|27577630|gb|CB000325.1|CB000325
genomic: GGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGgtatttgcct ... ttgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTT
EST: GGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAG GTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTEST: gi|27577051|gb|CA999745.1|CA999745
genomic: GGCTTCAACAGTCTGGAGGTCTTCACCATTCTGTTGCTACTAAAAGCGAGgtatttgcct ... ttgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTT
EST: CACCATTCTGTTGCTACTAAAAGCGAG GTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTT
genomic: CACCATTCTGTTGCTACTAAAAGCGAGgtatttgcct ... ttgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTT
caagtgttactatctgtggctcattcttgctattgggtttcctgattgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAG
tcctgat putative branch site (score: 62)
ttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttgcactcattttctcaaggattctgatttatagtttgtacccaagtgttactatctgtggctcattcttgctattgggtttcctgattgtgattagGTACCCTGCACACATAACGCTTCTGCGTGGAAATCATGAAAGCAGACAGTTGACACAG
tggttgc
- - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - -tgtaccc
- - - - - - - - - - - - - - - - - - - - - - - - -tgttact