1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agatatattgttgtcagataagaattaaaaaccgtctcaacgcaatattacaatgaaattaatcatgtgattgaatatccttgttaattctattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCC
species | Oryza sativa |
transcript | LOC_Os01g49690.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCEST: gi|218484413|gb|FG953190.1|FG953190
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTC
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|24468838|gb|CA305787.1|CA305787
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|27577318|gb|CB000013.1|CB000013
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|431829|gb|D23910.1|D23910
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|218492898|gb|FG955355.1|FG955355
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAA-TCCTCATGAAGGTCCTTTCTGTEST: gi|27577630|gb|CB000325.1|CB000325
genomic: TGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|27577051|gb|CA999745.1|CA999745
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|27334364|gb|CA882815.1|CA882815
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|51946060|gb|CV152401.1|CV152401
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTEST: gi|29686455|gb|CB682730.1|CB682730
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
EST: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAG ATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
genomic: TTCTTTGTGTTCATGGTGGACTTTCTCCTGATGTGCGCACTGTTGATCAGgtttgctgaa ... tattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGT
tattacaatgaaattaatcatgtgattgaatatccttgttaattctattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCC
tgttaat putative branch site (score: 60)
ttctatt CT-rich tract
aatgaaattaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatatattgttgtcagataagaattaaaaaccgtctcaacgcaatattacaatgaaattaatcatgtgattgaatatccttgttaattctattgaccagATTCGGACGATTGATCGCAATTGTGAAATTCCTCATGAAGGTCCTTTCTGTGATCTAATGTGGAGTGACCCTGAAGAAATAGAGACATGGGCTGTTAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - -ttgttgt
- - - - - - - - gataagaa
- - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - caatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga