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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccttgtgcattttttttttcaggctaaaacattcactgtttctcaagatctctattcaatccatcttttgacatttgaatgattgcagGTTAATGGAGCACTTGCTAGCACTTCCTGAAGATTCTCCCTTACCAACAAAGTATGTCAGGGAGTACAATGCACGGATTACT

Basic information

species Oryza sativa
transcript LOC_Os01g49010.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218491615|gb|FG954647.1|FG954647
EST:     TCTCATAGGAAGCTTCTGTTTGTTCCTTCTTCAGTGGATAGTTTACAGAG                         GTTAATGGAGCACTTGCTAGCACTTCCTGAAGATTCTCCCTTACCAACAAA
genomic: TCTCATAGGAAGCTTCTGTTTGTTCCTTCTTCAGTGGATAGTTTACAGAGgttagccttg ... atgattgcagGTTAATGGAGCACTTGCTAGCACTTCCTGAAGATTCTCCCTTACCAACAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgtttctcaagatctctattcaatccatcttttgacatttgaatgattgcagGTTAATGGAGCACTTGCTAGCACTTCCTGAAGATTCTCCCTTACCAACAAAGTATGTCAGGGAGTACAATGCACGGATTACT
                                ttttgac  putative branch site (score: 3)
                   tattcaat  TA-rich tract