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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaaacgtccacctgttttccaatttaacgatcatctgatccttaccccttttgtggcttgccgttctatctcaatacgctaacaggttgtcatgctttgtgaatgatggtgctctggtttactattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTATATGTTTGCTAAGTTGATACTGGTTCAAGTGCTGGCATACTTCTTTCTT

Basic information

species Oryza sativa
transcript LOC_Os01g49010.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87022036|gb|CI259108.1|CI259108
EST:     TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCT                         GCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
genomic: TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCTgtgagttaaa ... actattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
EST: gi|88970573|gb|CI385263.1|CI385263
EST:     TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCT                         GCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
genomic: TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCTgtgagttaaa ... actattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
EST: gi|87016765|gb|CI275767.1|CI275767
EST:     TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCT                         GCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
genomic: TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCTgtgagttaaa ... actattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
EST: gi|88296013|gb|CI535176.1|CI535176
EST:     TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCT                         GCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
genomic: TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCTgtgagttaaa ... actattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
EST: gi|89169599|gb|CI109958.1|CI109958
EST:     TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCT                         GCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA
genomic: TATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCTgtgagttaaa ... actattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgctaacaggttgtcatgctttgtgaatgatggtgctctggtttactattgcagGCTGTTTTGCAGAAGCTTCTTGACCGTGAAAGATACATGTAAAAGTTTCTATATGTTTGCTAAGTTGATACTGGTTCAAGTGCTGGCATACTTCTTTCTT
 cgctaac  putative branch site (score: 2)
                                          tttactatt  TA-rich tract