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gtaagtattagcacaatcaagaattcatgaaccttccattatattgaaatttcaatataaaaaaattacaacttttttttccccttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAGGGAGAAATCAGGCGCTTGAATATCGTCCTGTCAAACTTCTGATATCTT
species | Oryza sativa |
transcript | LOC_Os01g49010.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGA GCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAEST: gi|88970573|gb|CI385263.1|CI385263
genomic: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGAgtaagtatta ... ttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAA
EST: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGA GCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAEST: gi|87016765|gb|CI275767.1|CI275767
genomic: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGAgtaagtatta ... ttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAA
EST: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGA GCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAEST: gi|88296013|gb|CI535176.1|CI535176
genomic: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGAgtaagtatta ... ttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAA
EST: AGGATGCCTACCAAACGTCGGACAAATATTCACACACTNTTTGTTTTAGA GCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAEST: gi|89169599|gb|CI109958.1|CI109958
genomic: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGAgtaagtatta ... ttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAA
EST: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGA GCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAA
genomic: AGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGAgtaagtatta ... ttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAA
tatattgaaatttcaatataaaaaaattacaacttttttttccccttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAGGGAGAAATCAGGCGCTTGAATATCGTCCTGTCAAACTTCTGATATCTT
ttacaacttttttttc CT-rich tract
tgaaatttcaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattagcacaatcaagaattcatgaaccttccattatattgaaatttcaatataaaaaaattacaacttttttttccccttcgatatagGCTTTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAGGGAGAAATCAGGCGCTTGAATATCGTCCTGTCAAACTTCTGATATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA