1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtattttctgcatatatattgcacgtgtttttttcgtgtctattcaatttttccatgcaaaaaatcatacttaccttattttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGGGTAGTTGTTCCGATGGTTCACCCAAGTAATTGGATGGACGAATCAATT
species | Oryza sativa |
transcript | LOC_Os01g47600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGEST: gi|86532522|gb|CI172728.1|CI172728
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGEST: gi|86526333|gb|CI166539.1|CI166539
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGEST: gi|88513571|gb|CI441077.1|CI441077
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGEST: gi|88956119|gb|CI092407.1|CI092407
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGEST: gi|88519234|gb|CI446888.1|CI446888
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGEST: gi|87010545|gb|CI283620.1|CI283620
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
EST: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG GAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
genomic: AGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGgtgtattttc ... ttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCG
gtgtctattcaatttttccatgcaaaaaatcatacttaccttattttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGGGTAGTTGTTCCGATGGTTCACCCAAGTAATTGGATGGACGAATCAATT
tacttac putative branch site (score: 36)
cttaccttattttc CT-rich tract
aaaaaatcatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtattttctgcatatatattgcacgtgtttttttcgtgtctattcaatttttccatgcaaaaaatcatacttaccttattttcaatgcagGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAGAGGTGAACGTCGGGTAGTTGTTCCGATGGTTCACCCAAGTAATTGGATGGACGAATCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA