1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCCCTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATgtgcgtgtattatctggttccctttctctttgtgtggatttgcctggtctgtcagtgcgtgccgtggctggctcttgccacgaggtgattggtgctgctg...
species | Oryza sativa |
transcript | LOC_Os01g47600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACCGCCTTCTTCTACTTCAT GGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATEST: gi|86532522|gb|CI172728.1|CI172728
genomic: CCACCGCCTTCTTCTACTTCATgtgcgtgtat ... tctgctgaagGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAAT
EST: ACCGGCGCCGCCCCAAGAAGCCGCCCACGGCCTTCTTCTACTTCAT GGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATEST: gi|86526333|gb|CI166539.1|CI166539
genomic: ACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATgtgcgtgtat ... tctgctgaagGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAAT
EST: GTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACGTCAT GGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATEST: gi|88956119|gb|CI092407.1|CI092407
genomic: GTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATgtgcgtgtat ... tctgctgaagGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAAT
EST: GTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCAT GGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATEST: gi|87010545|gb|CI283620.1|CI283620
genomic: GTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATgtgcgtgtat ... tctgctgaagGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAAT
EST: GTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCAT GGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAAT
genomic: GTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATgtgcgtgtat ... tctgctgaagGGAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCCCTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATgtgcgtgtattatctggttccctttctctttgtgtggatttgcctggtctgtcagtgcgtgccgtggctggctcttgccacgaggtgattggtgctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC