1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agatatgtacagcttcatttcacatttttgcgcattgcattttagacataaactcatatcatacttatgtcaacaatttcacttttgttcattacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG
species | Oryza sativa |
transcript | LOC_Os01g47600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGEST: gi|86532522|gb|CI172728.1|CI172728
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAG
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGEST: gi|86526333|gb|CI166539.1|CI166539
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAG
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGEST: gi|88513571|gb|CI441077.1|CI441077
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAG
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGEST: gi|88956119|gb|CI092407.1|CI092407
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAG
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGEST: gi|88519234|gb|CI446888.1|CI446888
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAG
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGEST: gi|87010545|gb|CI283620.1|CI283620
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAG
EST: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAG GAAAGAGTGAAGTATTATGATATATGCAACCCGTAGAAGCGTGCAGAGTAT
genomic: GTAGGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGgtttgtgatt ... attacaccagGAAAGAGTGAAGTATTATGATATA-GCAACC-G-AGAAGCGTGCAGAGTAT
acataaactcatatcatacttatgtcaacaatttcacttttgttcattacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG
atatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatatgtacagcttcatttcacatttttgcgcattgcattttagacataaactcatatcatacttatgtcaacaatttcacttttgttcattacaccagGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- atatgta
- - - - -cagcttc
- - - - - - - - - - - - tttttgc
- - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - -acataaa