1 5' 3' | 2 5' 3' | 3 5' 3' |
TAGAGACTCAGTACTCGGGGGATACCGTTGTCATTGTTTCACCAGATTCTGACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaaccagcaattcattttattccactccattttgcaagtttttatctgcaggacttctggtaaacacagtgcaacaatgttagggagtttgttagtggaaacttttctcactgctgctcatgtatactctgcactattagtgattggggggaaacatatccttatatctctatcatttatcatttctgcag
species | Oryza sativa |
transcript | LOC_Os01g47190.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|88216981|gb|CI216685.1|CI216685
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|88217009|gb|CI216713.1|CI216713
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|88204300|gb|CI204149.1|CI204149
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|86882369|gb|CI325789.1|CI325789
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|86490152|gb|CI132785.1|CI132785
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|86507646|gb|CI150279.1|CI150279
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGCEST: gi|86523527|gb|CI163733.1|CI163733
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
EST: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAG GCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
genomic: GACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaacca ... atttctgcagGCATAGCAGCCTATTCTTTCAGCCCGGTGAGGTTCGACCTGTTGATCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGACTCAGTACTCGGGGGATACCGTTGTCATTGTTTCACCAGATTCTGACAACCTGTCAATTCTACAAGCTGGGTTGATAGGGCTAGACCTCCGGAGgtaaaaaccagcaattcattttattccactccattttgcaagtttttatctgcaggacttctggtaaacacagtgcaacaatgttagggagtttgttagtggaaacttttctcactgctgctcatgtatactctgcactattagtgattggggggaaacatatccttatatctctatcatttatcatttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG