1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcctgcctccgcctatctctgtttcttcaatcgcactctcttagcccacggcttcacacgagtacactagtatagtagtagtatagtatggccggtgaattgtgaattcgtgatcatgtattaatgtgttggttgcttgatttgtagCCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG
species | Oryza sativa |
transcript | LOC_Os01g47190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTACCAGGCCGCCGAGATCATCGCCGCCGCCAACGAGATCAACCGCAG CCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTTEST: gi|86507646|gb|CI150279.1|CI150279
genomic: GCCTACCAGGCCGCCGAGATCATCGCCGCCGCCAACGAGATCAACCGCAGgtgcctgcct ... tgatttgtagCCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTT
EST: GCTTACCAGGCCGCCGAGATCATCGCCGCCGCCAACGAGATCAACCGCAG CCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTT
genomic: GCCTACCAGGCCGCCGAGATCATCGCCGCCGCCAACGAGATCAACCGCAGgtgcctgcct ... tgatttgtagCCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTT
cggtgaattgtgaattcgtgatcatgtattaatgtgttggttgcttgatttgtagCCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG
atgtattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgcctccgcctatctctgtttcttcaatcgcactctcttagcccacggcttcacacgagtacactagtatagtagtagtatagtatggccggtgaattgtgaattcgtgatcatgtattaatgtgttggttgcttgatttgtagCCACATTGTACCCGAGTACAGCTTCTTAGATGCGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA