1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctttttctgaagcttcttcggtttatggatcagccatttttttgcttggtaaattccatcctgttctcattgaatttccctttcttgctatggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTGATGGTACACCAAATGAGAGTGTTGCAGATGTATTTGTTCGGGTAACGC
species | Oryza sativa |
transcript | LOC_Os01g47190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTEST: gi|88216981|gb|CI216685.1|CI216685
genomic: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
EST: GCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTEST: gi|88217009|gb|CI216713.1|CI216713
genomic: GCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
EST: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTEST: gi|88204300|gb|CI204149.1|CI204149
genomic: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
EST: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTEST: gi|86882369|gb|CI325789.1|CI325789
genomic: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
EST: TGGCCTTGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTEST: gi|86507646|gb|CI150279.1|CI150279
genomic: TGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
EST: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTEST: gi|86523527|gb|CI163733.1|CI163733
genomic: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
EST: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAG GTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
genomic: CGCGTGGCCTGGGCGCGTTTGAAGGGAAGAGCCTAGAAACATTGCCTGAGgtattcttca ... atggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGT
cttggtaaattccatcctgttctcattgaatttccctttcttgctatggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTGATGGTACACCAAATGAGAGTGTTGCAGATGTATTTGTTCGGGTAACGC
tttccctttcttgcta CT-rich tract
attgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttttctgaagcttcttcggtttatggatcagccatttttttgcttggtaaattccatcctgttctcattgaatttccctttcttgctatggatttagGTGTATGCATCAGACAGTATTTCGCCAGACATCAAGCCACCTCCTATTAGTGATGGTACACCAAATGAGAGTGTTGCAGATGTATTTGTTCGGGTAACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tccatcc