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gtaagtcttttcaaactataacctaaaactttttatatttaatttcctgtggattcactttgtcagactaaacttataacatactttttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGGCTCAG
species | Oryza sativa |
transcript | LOC_Os01g44040.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTAAGG-A-TGCACTCAGCAGCGTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|87006678|gb|CI285712.1|CI285712
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|88995453|gb|CI022776.1|CI022776
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: AGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|88477010|gb|CI414281.1|CI414281
genomic: AGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: GGAATTGCACTCAGCAGCTTAGAAACTTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|29659100|gb|CB655375.1|CB655375
genomic: GGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|88846659|gb|CI373427.1|CI373427
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: GTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|88515591|gb|CI443245.1|CI443245
genomic: GTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTGTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|86498852|gb|CI141485.1|CI141485
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|89177189|gb|CI043692.1|CI043692
genomic: CGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|86502826|gb|CI145459.1|CI145459
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|88956170|gb|CI092458.1|CI092458
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGEST: gi|88507120|gb|CI434626.1|CI434626
genomic: CTAAGGAATTGCACTCAGCAGCTTAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
EST: TAGAAACGTCTCTTTAACTCTTTTTGC GTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
genomic: TAGAAACGTCTCTTTAACTCTTTTTGCgtaagtcttt ... ttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTG
tttcctgtggattcactttgtcagactaaacttataacatactttttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGGCTCAG
ttataac putative branch site (score: 2)
ctttttacc putative PPT
taaacttataacatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcttttcaaactataacctaaaactttttatatttaatttcctgtggattcactttgtcagactaaacttataacatactttttaccaatagGTGGCTTGGCAAGATTACTCTGGAGACCTATATCTCTCAGATCCACATTTGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA