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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAAGATGGATGGAAAAGCTTGAAGAATCTGAAACTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgcattatccataagtcccctctgtgctctacattaaattagcaatgatgcacggagtagactgcttattaaccattcctttttgctccacctcag

Basic information

species Oryza sativa
transcript LOC_Os01g44040.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87006678|gb|CI285712.1|CI285712
EST:     CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTG                         GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
genomic: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgca ... tccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
EST: gi|29659100|gb|CB655375.1|CB655375
EST:     CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTG                         GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
genomic: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgca ... tccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
EST: gi|86502826|gb|CI145459.1|CI145459
EST:     CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTG                         GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
genomic: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgca ... tccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC