1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACATgtgtgtgtttgtttcctctcccttactcattgcctgccctatccattccctttcttccctccctccctccctctctcccttcaccccaactatccctccc...
species | Oryza sativa |
transcript | LOC_Os01g43170.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACAT GTATTTTCTGCTTTTGGCTTTGTTCAAAAGATTGCCACCTTTTAGAAGGCAEST: gi|58655600|gb|CK044280.1|CK044280
genomic: TGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACATgtgtgtgttt ... gtgtgtgcagGTATTTTCTGCTTTTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCA
EST: TGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACAT GTATTTTCTGCTTTTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCAEST: gi|29681003|gb|CB677278.1|CB677278
genomic: TGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACATgtgtgtgttt ... gtgtgtgcagGTATTTTCTGCTTTTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCA
EST: TGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACAT GTATTTTCTGCTTTTGGCTTTGTGTCAAA-GATTGCCACCTTTGAGAAAGC
genomic: TGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACATgtgtgtgttt ... gtgtgtgcagGTATTTTCTGCTTTTGGCTTTGT-TCAAAAGATTGCCACCTTTGAGAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACATgtgtgtgtttgtttcctctcccttactcattgcctgccctatccattccctttcttccctccctccctccctctctcccttcaccccaactatccctccc
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