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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgtaatgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag

Basic information

species Oryza sativa
transcript LOC_Os01g40840.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G094039_T01 (Zea mays), 5'ss of exon 5
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgt----aatgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag
|||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||  |||||| || | |||||    | | |||  || | || |||||||  |||||||||     |||||| || | ||||| |||||| | |||||||||  |||||||||||||||
ATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTCTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtgcctattctcacccactcttttagtgattgtctgctatttctttactaggaatacagtatttgcagttttcttgaatgattgcttggggttgtacag

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G366935_T05 (Zea mays), 5'ss of exon 7
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgta---atgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag---
|||||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||| || | ||||||   ||    | |  |||| ||||||| ||||||||       |||||||||   ||||| |||||| | |||||||||  |||||||||||||||   
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttt-tagtgattatctgctaaatctttactaggcatagagtatttgcagttttcttgaatgattgcttggggttgtacagaag

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 6
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgt----aatgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag-
|||||||||| || || ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||  |||||| || | |||||    | | |||  || | || |||||||  |||||||||     |||||| || | ||||| |||||| | |||||||||  ||||||||||||||| 
ATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTCTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtgcctattctcacccactcttttagtgattgtctgctatttctttactaggaatacagtatttgcagttttcttgaatgattgcttggggttgtacaga

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 6
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgta---atgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag
|||||||||| ||  | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||| || | ||||||   ||    | |  |||| ||||||| ||||||||       |||||||||   ||||| |||||| | |||||||||  |||||||||||||||
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttt-tagtgattatctgctaaatctttactaggcatagagtatttgcagttttcttgaatgattgcttggggttgtacag

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 6
ATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGgtaatgtcaatcagttttgtagtgatcatctgctattctgaaactaggcatgcggtattagcagttatgttgaatgatcccttggggttgtacag
||||||||||| ||||||| || |||||||| || ||||||||||| ||||| ||||| || || || ||| ||| | | ||  | |  ||||||   |  || | |||||    ||||  |    ||  | |   | |  |  |    |||  |  ||| |      |    ||||  | ||||||
ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgta---tttattatttttg----gatc--caaacataataatgtttg-tagactcagttataatatatttaagggtaattattggattggtacag