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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATgtgagcgccaccccgttcctgtctcttggttggctgaaaggagatttgtgtgttcttagatcctgcctgcttggaaactgcagtagttttgttcagtttt...

Basic information

species Oryza sativa
transcript LOC_Os01g40840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g40840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 2
GTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATgtgagcgccaccccgttcctgtctcttggttggctgaaaggagatttgtgtgttcttagatcctgcctgcttggaaactgcagtagttt-tgttcagtttt----
|| |||||||| ||||||||||| || |||||||| || ||||| || || |||| ||| |||||||| ||||||||||||| ||| |||||||||  ||   |  ||    |||||   |  | |    |     |||||  |   || |||  |  |  |||     |  | || ||| |  | |||       
GTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGACACTTCGTATTCGACCTTGGCGAGAACTTGACCCGCCGATgtgagttcccgactctttgactctctccttcagttcctcgagcccttgtgcatggatatatc--gtttagttgtg---tctaataatttgtaattagtggcaaca

upper sequence: LOC_Os01g40840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 2
GTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATgtgagcgccaccccgttcctgtctcttggttggctgaaaggagatttgtgtgttcttagatcctgcctgcttggaaactgcagtagttttgttcagtttt
|| |||||||| ||||||||||| || |||||||| || ||||||||||| |||||||| ||||| |||||||||||||||| ||| ||||||||||||| | |  ||    |||||   |  | |    |     | |||| |   |||    |   ||  |  ||      ||| ||     ||   | 
GTAGCGAGGGGTGGCGCGTCGCCTCCATGGAGGGAGGATGACCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccccactctttgactctctccttccgttcctcgagccctggtgtatggatagcgtttagttgtgtctaatgatttgtaattagaggcaacatc