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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtgattgtttgattctgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatgcttgaccatcttttcctttctttcttctaaaatag

Basic information

species Oryza sativa
transcript LOC_Os01g40840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G366935_T07 (Zea mays), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtga----ttgtttgattctgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatgcttgaccatcttttcctttctttcttctaaaatag
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||| ||||||||||||||||||| ||| | |||| ||||||||| | ||||  ||  | |||||  ||| |  ||   |||||||||||  ||||||||| |   | |    
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCGACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcatatcaattattagctaatttggtagctgcagcttca--ctattattgctccaaaaggccagtgttgaccatctt--cctttctttttgtaacag---

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtga----ttgtttgattctgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatgcttgaccatcttttcctttctttcttctaaaatag
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||| ||||||||||| ||||||| ||| | |||| ||||||    | |||| | |||| |||||  ||||| |||   || ||||||||||| ||| |  |           
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcacatcaattattagctaatttggtagcattggcttcacttttctattgcttcaaaggggcagtgttaaccatcttttcttttgtaacag---------

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtgattgtttgattctgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatg--cttgaccatcttttcctttctttcttctaaaatag-----------------------------------------------------------
|| |||||||| | |||||||||||||||||||| ||||   || ||||||||||| ||||| ||||| |||||||| || || |||||||||||||||||| ||||   | ||  |  ||    ||| ||      |  |    |   |  |  || | |||  || |    ||    | ||||   ||  || |    | |||||||| | |    ||                                                             
GGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtg---gattattcttggccttcagttt-----atttctcatgtttcattcttaagtctcttgcttacaaattaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcag

upper sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 6
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtg-attgtt--------------------tgattctgcatatcaattcttaacaaattcggtagctgctgattcattctt-----ctgttgc---tgaaaaggagcatgcttg---accatcttt-tcctttctttcttctaaaatag---------------------------
|| ||||| || | |||||||||||||||||||| ||||   || || |||||||| ||||| ||||| |||||||| || || ||||||||||||||||||||||| |||||                     | |||||| || | | ||  ||||  |  |  |  |  | |||   || ||     |||||     ||   ||||   | | |    |  || ||| |    | ||| || ||| ||                             
GGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTTCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtgtgtgcattgtccttggcccttgctttatctctcattctgtattttattttctaacctaaccaattacc-cagatctgttttttgggcctgttttgtttgtccaggactgtacctctgtattatgtttgtgtcctttttgttttaacatgattttccttgctttacaatatccaacag