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gttagttagctcttacagtgcttcagtggtaaatacccaagtacaggaatctaatctaggacacaccatacattgatcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGC
species | Oryza sativa |
transcript | LOC_Os01g39270.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|89182128|gb|CI012062.1|CI012062
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|88289242|gb|CI553218.1|CI553218
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: ACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|88510436|gb|CI437942.1|CI437942
genomic: ACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: CCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|88981451|gb|CI027069.1|CI027069
genomic: CCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|16576901|gb|BI804197.1|BI804197
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTCGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|38472714|gb|CF956846.1|CF956846
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|88971438|gb|CI017752.1|CI017752
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|86838955|gb|CI330366.1|CI330366
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTEST: gi|38471057|gb|CF955188.1|CF955188
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
EST: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAG GTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
genomic: GACTGCTCCTGAGCGAAAAAGTTGGCCTAGACCCCAATACTCTTGTCGAGgttagttagc ... tcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCT
aatacccaagtacaggaatctaatctaggacacaccatacattgatcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGC
tcctttac CT-rich tract
aatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttagctcttacagtgcttcagtggtaaatacccaagtacaggaatctaatctaggacacaccatacattgatcctttacagGTTATTTCACAAGGTGCTATCAGTGCTCCCATGTTCTCCCTCAAGGGCCCTTCCATGGTTAAAGCTGCATACCCTACTGCTTTTCCTCTGAAGCATCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC