1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaagaaaagagagagaaaaaaaaagacataattctatttgacaaaaagatatgtacagcactttgcttgatacaaagaggatgccttgcctgcctacagGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCG
species | Oryza sativa |
transcript | LOC_Os01g39270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAACAGGACCAGGAGCAAGTGCGACCCGCTCCTCAGCCTCGGCGCCAA GTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGC
genomic: TGGAACAGGACCAGGAGCAAGTGCGACCCGCTCCTCAGCCTCGGCGCCAAgtatgccatc ... ctgcctacagGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGC
aaagatatgtacagcactttgcttgatacaaagaggatgccttgcctgcctacagGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCG
gcttgat putative branch site (score: 14)
ccttgcct putative PPT
atacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagaaaagagagagaaaaaaaaagacataattctatttgacaaaaagatatgtacagcactttgcttgatacaaagaggatgccttgcctgcctacagGTACGAGCCTTCACCGGCCGATGTTGCTTCGTCTTGCGATGTGACCTTCGCGATGCTTGCTGATCCGGAGAGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- aagaaaa
- - - - - agagagaa
- - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgcc