1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttaacttcttttatctacaatcagtactccatttaggccctcatattgagccaggaaatgcacttacgctgtccttactctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTGTTAATATGGTCATGGGGAG
species | Oryza sativa |
transcript | LOC_Os01g39270.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAG TCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTEST: gi|16576901|gb|BI804197.1|BI804197
genomic: ATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGgttaacttct ... ctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTT
EST: GATGTTAT-GGCAAG TCAAAGA-TTTTCCTC-GTGACGTT-GCAAA-GTGCAAGACATGAAGCTCGEST: gi|38472714|gb|CF956846.1|CF956846
genomic: GATGTTATGGGCAAGgttaacttct ... ctgaaatcagTC-AAGATTTTTCCTCGGTGACGTTGGCAAAGGTGC-AGACATGAAGCTCG
EST: ATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAG TCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTEST: gi|88971438|gb|CI017752.1|CI017752
genomic: ATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGgttaacttct ... ctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTT
EST: GTTATGGGCAAG TCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTEST: gi|38471057|gb|CF955188.1|CF955188
genomic: GTTATGGGCAAGgttaacttct ... ctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTT
EST: ATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAG TCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTT
genomic: ATGAGTCCTTGTACAATAGAGTGGCATCCCTCCTTGATGTTATGGGCAAGgttaacttct ... ctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTT
aggccctcatattgagccaggaaatgcacttacgctgtccttactctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTGTTAATATGGTCATGGGGAG
tccttac putative branch site (score: 10)
tccttactct CT-rich tract
tcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacttcttttatctacaatcagtactccatttaggccctcatattgagccaggaaatgcacttacgctgtccttactctgaaatcagTCAAGATTTTTCCTCGGTGACGTTGGCAAAGGTGCAGACATGAAGCTCGTTGTTAATATGGTCATGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC