1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagcaatatgtgacgggaattgtagaactttgttagacagaaagttattgtgctgaagatctgaaatcttatgttactctctattttatgataatgcttggctatccgatgcttcactgtgctgatatcctggtttcttgacaactgacaagtgcttacatcggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAGCCACAGATGATGTCCGCTTCCTTCTCAGTATACATGAGAAAATGATGG
species | Oryza sativa |
transcript | LOC_Os01g38620.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|33795398|gb|CF323569.1|CF323569
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|38472674|gb|CF956806.1|CF956806
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|86908033|gb|CI298799.1|CI298799
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|218495275|gb|FG966279.1|FG966279
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|218500721|gb|FG955417.1|FG955417
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|33793613|gb|CF322690.1|CF322690
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|58655403|gb|CK044083.1|CK044083
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATEST: gi|27577933|gb|CB000628.1|CB000628
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTAT
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|218487806|gb|FG949430.1|FG949430
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GGAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAEST: gi|218499923|gb|FG954899.1|FG954899
genomic: GGAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
EST: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG GACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
genomic: GAATGGCATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGgttagcaata ... cggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCA
ctgtgctgatatcctggtttcttgacaactgacaagtgcttacatcggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAGCCACAGATGATGTCCGCTTCCTTCTCAGTATACATGAGAAAATGATGG
tgcttac putative branch site (score: 378)
ttttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcaatatgtgacgggaattgtagaactttgttagacagaaagttattgtgctgaagatctgaaatcttatgttactctctattttatgataatgcttggctatccgatgcttcactgtgctgatatcctggtttcttgacaactgacaagtgcttacatcggttttcagGACCCTAACTTTTGGACGCATAGGCCTTTATCTGAAATGATGATTCGAGCAGCCACAGATGATGTCCGCTTCCTTCTCAGTATACATGAGAAAATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG