1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttttacattaatttttgaagttctatccaaacaacttcttgtttgaacctttagccgcttctttctatgctaatattttgttactatgaacattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
species | Oryza sativa |
transcript | LOC_Os01g37910.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|51946162|gb|CV152503.1|CV152503
genomic: TGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: ATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|58686800|gb|CK075487.1|CK075487
genomic: ATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|4715544|gb|AU056660.1|AU056660
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|58592657|gb|CF990965.1|CF990965
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCAGGCAAGCAGCAGTACAATCTCEST: gi|163923567|gb|EG713308.1|EG713308
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCEST: gi|58692781|gb|CK081468.1|CK081468
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATC
EST: GACACATGCCTA-GGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|88387208|gb|CI580553.1|CI580553
genomic: GACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|58692937|gb|CK081624.1|CK081624
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|58691202|gb|CK079889.1|CK079889
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCEST: gi|58688098|gb|CK076785.1|CK076785
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
EST: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAG CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
genomic: TACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGgtacttcatt ... acattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
gaacctttagccgcttctttctatgctaatattttgttactatgaacattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
tgctaat putative branch site (score: 2)
taatattttgttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttacattaatttttgaagttctatccaaacaacttcttgtttgaacctttagccgcttctttctatgctaatattttgttactatgaacattgacagCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact