1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGATGCCAACCTATCCATACCTCTACGGTGATGATCTTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagattagttatttggctattctgcactatataattgctgctgcttgtagttgtagaattgatttgatgaatctgttatctcctttgcag
species | Oryza sativa |
transcript | LOC_Os01g37910.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58692544|gb|CK081231.1|CK081231
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58677828|gb|CK066515.1|CK066515
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58686800|gb|CK075487.1|CK075487
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|4715544|gb|AU056660.1|AU056660
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58691427|gb|CK080114.1|CK080114
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: CTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|163923567|gb|EG713308.1|EG713308
genomic: CTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58692937|gb|CK081624.1|CK081624
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58691202|gb|CK079889.1|CK079889
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGEST: gi|58688098|gb|CK076785.1|CK076785
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
EST: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTG GTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
genomic: TTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagatt ... tcctttgcagGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGCCAACCTATCCATACCTCTACGGTGATGATCTTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGACGTACAAAAGCCTGgtatcagattagttatttggctattctgcactatataattgctgctgcttgtagttgtagaattgatttgatgaatctgttatctcctttgcag
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT