1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCTGGCGCGGCGGCGGACGACGCTGCCGAGGCCGCCGAGGGCACCAGGTGGGCCGTCCTCATCGCCGGCTCCAACGGCTACTACAACTACCGCCACCAGgtgagacttttgctcgcccgcaacccctcgaaaaccacgctcctcgccgcgcgcggcggcacgtatggtttggtttggtttgatccttcgcgtgcgtgcg...
species | Oryza sativa |
transcript | LOC_Os01g37910.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAACTACCGCCACCAG GCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGACEST: gi|33799061|gb|CF325390.1|CF325390
genomic: CAACTACCGCCACCAGgtgagacttt ... aaacttgcagGCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGAC
EST: CGTCCTCATCGCCGGCTCCAACGGCTACTACAACTACCGCCACCAG GCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGAC
genomic: CGTCCTCATCGCCGGCTCCAACGGCTACTACAACTACCGCCACCAGgtgagacttt ... aaacttgcagGCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGGCGCGGCGGCGGACGACGCTGCCGAGGCCGCCGAGGGCACCAGGTGGGCCGTCCTCATCGCCGGCTCCAACGGCTACTACAACTACCGCCACCAGgtgagacttttgctcgcccgcaacccctcgaaaaccacgctcctcgccgcgcgcggcggcacgtatggtttggtttggtttgatccttcgcgtgcgtgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcggcg