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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtatttcagaccttaattcctttgaactcgcagtcgtgttaccatgtgcctaatgtagctcaatggctgagcag

Basic information

species Oryza sativa
transcript LOC_Os01g37910.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692028|gb|CK080715.1|CK080715
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|51946162|gb|CV152503.1|CV152503
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|4715544|gb|AU056660.1|AU056660
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|4715982|gb|AU057098.1|AU057098
EST:     CTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58592657|gb|CF990965.1|CF990965
EST:     CGATGTCCACAACCTGAGAACTGAATCAGGCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58692937|gb|CK081624.1|CK081624
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58688098|gb|CK076785.1|CK076785
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58692781|gb|CK081468.1|CK081468
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58691202|gb|CK079889.1|CK079889
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCA
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCA
EST: gi|88387208|gb|CI580553.1|CI580553
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58690742|gb|CK079429.1|CK079429
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTG
EST: gi|58686800|gb|CK075487.1|CK075487
EST:     CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|58696195|gb|CK084882.1|CK084882
EST:     CTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: CTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
EST: gi|29641855|gb|CB646862.1|CB646862
EST:     GCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTC                         GTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG
genomic: GCGATGTCCACAACCTGAGAACTGAATCACTCAAGCAGCAGTACAATCTCgtaagtattt ... ggctgagcagGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTG