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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttactgctggcaatagcatgatggttcttgaaattgggcatggttgatacttgagtaacatatgtcctgtgtttcttggggttttgaaacttgcagGCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGACGAGAACATCATCGTCTTCATGTACGATGACATCGCGCACAACCCGGAGA

Basic information

species Oryza sativa
transcript LOC_Os01g37910.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58600420|gb|CK010948.1|CK010948
EST:     GGCCAATC-TGTTTCTGCATGATATGAGTTTACTATTGCTGTAATTACTG                         GCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGAC
genomic: GGCCAATCTTGTTTCTGCATGATTTGAGTTTACTATTGCTGTAATTACTGgtaatttact ... aaacttgcagGCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgatacttgagtaacatatgtcctgtgtttcttggggttttgaaacttgcagGCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGACGAGAACATCATCGTCTTCATGTACGATGACATCGCGCACAACCCGGAGA
           gagtaac  putative branch site (score: 2)
              taacatat  TA-rich tract