1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtttctttactgaacttgcatatattgctctttggttgttcaccgaaaatgttctgctactgttgccattctaatttgtaaattaaattaaatttgcagGTTATACTCACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAGAAGGCAAGGGAACTGCTAACTGAACTGGAAGCTTCAGGCTTCGCACAGG
species | Oryza sativa |
transcript | LOC_Os01g37870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGATCTGTTGATGAAAGATTTGAGGTCCTCAGGGTTAACACCGAACAAG GTTATACTCACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAG
genomic: CTGATCTGTTGATGAAAGATTTGAGGTCCTCAGGGTTAACACCGAACAAGgtttgcttct ... aaatttgcagGTTATACTCACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAG
gaaaatgttctgctactgttgccattctaatttgtaaattaaattaaatttgcagGTTATACTCACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAGAAGGCAAGGGAACTGCTAACTGAACTGGAAGCTTCAGGCTTCGCACAGG
ttctaat putative branch site (score: 9)
attctaatttgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttctttactgaacttgcatatattgctctttggttgttcaccgaaaatgttctgctactgttgccattctaatttgtaaattaaattaaatttgcagGTTATACTCACCACTTTGTTAAAGGTGTATTCTAAAGGTGGTCTCTTTGAGAAGGCAAGGGAACTGCTAACTGAACTGGAAGCTTCAGGCTTCGCACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
tgtttct
- - - -ttactga
- - - - - - - acttgca
- - - - - - - - - - - -tattgct
- - - - - - - - - - - - - - - - - - - - - accgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc