1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttggccaattcatacattaagacatcattttcgtagatgcgtctaaggcaagaattggcaggcagcgatgtaaaataatagctgattttttttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTGAGATATTCTTTTCATGCTGCTAAGCTGAACGACAGAGGCTACTCTATGA
species | Oryza sativa |
transcript | LOC_Os01g37870.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA ATGAAATAGTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTGEST: gi|88510090|gb|CI437596.1|CI437596
genomic: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
EST: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA ATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTGEST: gi|88471419|gb|CI408690.1|CI408690
genomic: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
EST: CTANTAAGTGGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA ATGAAATAGTGGACCAGAGTATCTGGTAATTCACACGTCCCTTTCAATGTGEST: gi|88471804|gb|CI409075.1|CI409075
genomic: CTAGTAAGT-GGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
EST: ACTAGTAAGTGNTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA ATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
genomic: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
aggcaagaattggcaggcagcgatgtaaaataatagctgattttttttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTGAGATATTCTTTTCATGCTGCTAAGCTGAACGACAGAGGCTACTCTATGA
agctgat putative branch site (score: 4)
ttttttttttgtc CT-rich tract
atgtaaaataatagct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggccaattcatacattaagacatcattttcgtagatgcgtctaaggcaagaattggcaggcagcgatgtaaaataatagctgattttttttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTGAGATATTCTTTTCATGCTGCTAAGCTGAACGACAGAGGCTACTCTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa